Variant report

Variant	rs2678377
Chromosome Location	chr1:223561839-223561840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223553413..223556080-chr1:223561320..223563924,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10907376	0.81[EUR][1000 genomes]
rs11261264	0.81[EUR][1000 genomes]
rs12123148	0.82[EUR][1000 genomes]
rs12140453	0.80[EUR][1000 genomes]
rs12564615	0.80[EUR][1000 genomes]
rs1547788	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1619227	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1713219	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1713220	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17163824	0.90[AMR][1000 genomes]
rs17163825	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17163828	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17163831	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1772280	0.82[EUR][1000 genomes]
rs1772284	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2459849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2487521	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34150324	0.80[EUR][1000 genomes]
rs35318812	0.89[AMR][1000 genomes]
rs61838234	0.90[AMR][1000 genomes]
rs61838235	0.90[AMR][1000 genomes]
rs61838236	0.89[AMR][1000 genomes]
rs61838237	0.89[AMR][1000 genomes]
rs61838241	0.89[AMR][1000 genomes]
rs61838246	0.90[AMR][1000 genomes]
rs61838249	0.91[AMR][1000 genomes]
rs61839867	0.83[EUR][1000 genomes]
rs6604709	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7536652	0.90[AMR][1000 genomes]
rs7541162	0.89[AMR][1000 genomes]
rs7555607	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs870486	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9442046	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223561600-223563200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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