Variant report

Variant	rs1772280
Chromosome Location	chr1:223558597-223558598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223557682..223561611-chr1:223564803..223568254,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178395	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10495206	0.83[EUR][1000 genomes]
rs10495207	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10907376	0.96[EUR][1000 genomes]
rs11261264	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11261270	0.88[EUR][1000 genomes]
rs12123148	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12140453	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12564615	0.95[EUR][1000 genomes]
rs1547788	0.85[EUR][1000 genomes]
rs1619227	0.89[EUR][1000 genomes]
rs1713220	0.82[EUR][1000 genomes]
rs17162008	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17163825	0.80[EUR][1000 genomes]
rs17163827	0.83[EUR][1000 genomes]
rs17163828	0.82[EUR][1000 genomes]
rs17163831	0.84[EUR][1000 genomes]
rs17480087	0.83[EUR][1000 genomes]
rs17480344	0.83[EUR][1000 genomes]
rs17539269	0.82[EUR][1000 genomes]
rs17539583	0.83[EUR][1000 genomes]
rs17578168	0.83[EUR][1000 genomes]
rs17578203	0.88[EUR][1000 genomes]
rs2138966	0.87[EUR][1000 genomes]
rs2459849	0.82[EUR][1000 genomes]
rs2487521	0.82[EUR][1000 genomes]
rs2678377	0.82[EUR][1000 genomes]
rs34150324	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59355120	0.88[EUR][1000 genomes]
rs61838210	0.83[EUR][1000 genomes]
rs61838229	0.83[EUR][1000 genomes]
rs61838230	0.83[EUR][1000 genomes]
rs61838231	0.83[EUR][1000 genomes]
rs61838238	0.83[EUR][1000 genomes]
rs61838239	0.83[EUR][1000 genomes]
rs61838240	0.83[EUR][1000 genomes]
rs61838243	0.83[EUR][1000 genomes]
rs61838250	0.86[EUR][1000 genomes]
rs61838252	0.92[EUR][1000 genomes]
rs61839867	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61839875	0.88[EUR][1000 genomes]
rs61839876	0.88[EUR][1000 genomes]
rs61839877	0.88[EUR][1000 genomes]
rs61839878	0.88[EUR][1000 genomes]
rs61839879	0.88[EUR][1000 genomes]
rs6604709	0.89[EUR][1000 genomes]
rs7555607	0.89[EUR][1000 genomes]
rs870486	0.83[EUR][1000 genomes]
rs9442046	0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1772280	SUSD4	cis	Heart Left Ventricle	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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