Variant report

Variant	rs61839875
Chromosome Location	chr1:223574631-223574632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223574260..223577674-chr1:223613937..223618124,4	MCF-7	breast:
2	chr1:223536303..223538270-chr1:223574488..223576964,2	K562	blood:

Variant related genes	Relation type
ENSG00000143502	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10495207	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10907376	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11261264	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11261270	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12123148	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12134824	0.82[AMR][1000 genomes]
rs12140453	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12564615	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17162008	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17578203	0.85[AMR][1000 genomes]
rs1772280	0.88[EUR][1000 genomes]
rs2138966	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34150324	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59355120	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61838250	0.81[AMR][1000 genomes]
rs61838252	0.84[EUR][1000 genomes]
rs61839867	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61839876	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61839877	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61839878	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61839879	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv4687	chr1:223565080-223610362	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223574400-223574800	Active TSS	H9 Cell Line	embryonic stem cell
2	chr1:223574400-223575000	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr1:223574400-223575000	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr1:223574400-223575200	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr1:223574400-223575200	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr1:223574600-223575600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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