Variant report

Variant	rs2178088
Chromosome Location	chr7:48628067-48628068
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10216298	0.80[EUR][1000 genomes]
rs10227179	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs10227187	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs10230786	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs10237159	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs10237473	0.83[EUR][1000 genomes]
rs10238373	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248546	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10249009	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs10249279	0.83[EUR][1000 genomes]
rs10251517	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs10255612	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs10256255	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs10267753	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs10268515	0.81[EUR][1000 genomes]
rs10273407	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10276131	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10276989	0.93[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs10277088	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10280481	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs10282413	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11762388	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs11765338	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs11765607	0.83[EUR][1000 genomes]
rs11766842	0.82[EUR][1000 genomes]
rs11770110	0.82[JPT][hapmap]
rs11771470	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11772033	0.83[EUR][1000 genomes]
rs11981491	0.81[EUR][1000 genomes]
rs11982751	0.80[EUR][1000 genomes]
rs12533158	0.83[EUR][1000 genomes]
rs12533748	0.83[EUR][1000 genomes]
rs12535273	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12535354	0.94[JPT][hapmap]
rs12537664	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12540368	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1433499	0.81[EUR][1000 genomes]
rs1433500	0.81[EUR][1000 genomes]
rs1534393	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17132359	0.83[EUR][1000 genomes]
rs17662893	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17730186	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs1836092	0.81[EUR][1000 genomes]
rs1881077	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1881079	0.81[EUR][1000 genomes]
rs1918579	0.85[EUR][1000 genomes]
rs2043391	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs2043392	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2043393	0.93[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs2043394	0.81[EUR][1000 genomes]
rs2885482	0.81[EUR][1000 genomes]
rs35345934	0.81[EUR][1000 genomes]
rs4022347	0.85[EUR][1000 genomes]
rs4144065	0.92[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs4256548	0.81[EUR][1000 genomes]
rs4621756	0.81[EUR][1000 genomes]
rs4623358	0.81[EUR][1000 genomes]
rs4642585	0.81[EUR][1000 genomes]
rs4917019	0.81[EUR][1000 genomes]
rs4917020	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs4917140	0.81[EUR][1000 genomes]
rs4917141	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs4917142	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs4917143	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs4917144	0.86[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs4917145	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs4917146	0.81[EUR][1000 genomes]
rs4917147	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs4917148	0.81[EUR][1000 genomes]
rs4917149	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs4917152	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs4917153	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs4917154	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs4917155	0.83[EUR][1000 genomes]
rs56395407	0.91[EUR][1000 genomes]
rs59915104	0.83[EUR][1000 genomes]
rs6959861	0.94[JPT][hapmap]
rs6966120	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs73107511	0.83[EUR][1000 genomes]
rs73107532	0.80[EUR][1000 genomes]
rs73107543	0.85[EUR][1000 genomes]
rs73111420	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs735069	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs735070	0.93[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs7782619	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs7789206	0.83[EUR][1000 genomes]
rs7799302	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7808037	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv888008	chr7:48568425-48652224	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48600400-48634200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:48624000-48630200	Strong transcription	Primary neutrophils fromperipheralblood	blood

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