Variant report

Variant	rs6966120
Chromosome Location	chr7:48645113-48645114
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10216298	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10227179	0.85[CEU][hapmap]
rs10230786	0.83[CEU][hapmap]
rs10237159	0.84[CEU][hapmap]
rs10238373	0.93[CEU][hapmap];0.89[GIH][hapmap];0.91[EUR][1000 genomes]
rs10249009	0.85[CEU][hapmap]
rs10251517	0.85[CEU][hapmap]
rs10252144	0.99[ASN][1000 genomes]
rs10255612	0.85[CEU][hapmap]
rs10256255	0.85[CEU][hapmap]
rs10267753	0.85[CEU][hapmap]
rs10273407	0.85[CEU][hapmap]
rs10276131	0.82[EUR][1000 genomes]
rs10276989	0.85[CEU][hapmap]
rs10277088	0.85[CEU][hapmap]
rs10280481	0.85[CEU][hapmap]
rs10282413	0.85[CEU][hapmap]
rs11762388	0.85[CEU][hapmap]
rs11771470	0.84[EUR][1000 genomes]
rs11975477	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11982751	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12535273	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs12537664	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs12540368	0.85[CEU][hapmap]
rs17662893	0.82[EUR][1000 genomes]
rs17730186	0.85[CEU][hapmap]
rs1881077	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs1986362	1.00[ASN][1000 genomes]
rs2043391	0.85[CEU][hapmap]
rs2043392	0.91[CEU][hapmap]
rs2043393	0.85[CEU][hapmap]
rs2178088	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs28610321	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28855442	0.96[ASN][1000 genomes]
rs4144065	0.85[CEU][hapmap]
rs4917020	0.82[CEU][hapmap]
rs4917141	0.85[CEU][hapmap]
rs4917142	0.85[CEU][hapmap]
rs4917143	0.85[CEU][hapmap]
rs4917145	0.85[CEU][hapmap]
rs4917147	0.85[CEU][hapmap]
rs4917149	0.85[CEU][hapmap]
rs4917152	0.85[CEU][hapmap]
rs4917153	0.85[CEU][hapmap]
rs4917154	0.85[CEU][hapmap]
rs56395407	0.81[EUR][1000 genomes]
rs73096418	0.90[ASN][1000 genomes]
rs73111420	0.84[EUR][1000 genomes]
rs735069	0.85[CEU][hapmap]
rs735070	0.85[CEU][hapmap]
rs7782619	0.85[CEU][hapmap]
rs7799302	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs7808037	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv888008	chr7:48568425-48652224	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48635800-48672200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:48640200-48645800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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