Variant report

Variant	rs7808037
Chromosome Location	chr7:48600786-48600787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10227179	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10227187	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10237159	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10237473	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10238373	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10248546	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10249009	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10249279	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10251517	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10255612	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10256255	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10267753	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10268515	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10273407	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10276131	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10276989	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10277088	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10280481	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10282413	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11762388	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11765338	0.84[AMR][1000 genomes]
rs11765607	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11766842	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11771470	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11772033	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11981491	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12533158	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12533748	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12535273	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12535354	0.81[AMR][1000 genomes]
rs12537664	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12540368	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1433499	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1433500	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1534393	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132342	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17132359	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17662629	0.86[AMR][1000 genomes]
rs17662893	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17730186	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1836092	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1881077	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1881079	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1881080	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1918579	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2043391	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2043392	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2043393	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2043394	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2178088	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2885482	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35345934	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4022347	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4144065	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4256548	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4621756	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4623358	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4642585	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4917019	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4917020	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4917140	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4917141	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4917142	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4917143	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4917144	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4917145	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4917146	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4917147	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4917148	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4917149	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4917152	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4917153	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4917154	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4917155	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56395407	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58343601	0.81[AMR][1000 genomes]
rs58713664	0.81[AMR][1000 genomes]
rs59698723	0.81[AMR][1000 genomes]
rs59915104	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67312973	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67563133	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6959861	0.81[AMR][1000 genomes]
rs6966120	0.84[EUR][1000 genomes]
rs73105511	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73107511	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73107532	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73107543	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73111420	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs735069	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs735070	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7782619	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7789206	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7799302	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv888008	chr7:48568425-48652224	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
3	esv275242	chr7:48592013-48605608	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48589200-48602800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr7:48600400-48634200	Weak transcription	Primary hematopoietic stem cells	blood

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