Variant report

Variant	rs2182034
Chromosome Location	chr14:65391554-65391555
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65380332..65384001-chr14:65388831..65392561,3	K562	blood:
2	chr14:65380579..65384480-chr14:65390113..65394782,6	MCF-7	breast:
3	chr14:65379584..65383779-chr14:65391377..65398715,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258289	Chromatin interaction
ENSG00000125954	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12433745	1.00[JPT][hapmap]
rs17102244	1.00[AMR][1000 genomes]
rs17102318	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1951496	1.00[AMR][1000 genomes]
rs3742600	0.83[AFR][1000 genomes]
rs3825644	1.00[CHB][hapmap]
rs4899144	1.00[JPT][hapmap]
rs4899145	1.00[JPT][hapmap]
rs4902309	1.00[JPT][hapmap]
rs4902310	1.00[JPT][hapmap]
rs4902312	1.00[JPT][hapmap]
rs55796139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147408	0.82[EUR][1000 genomes]
rs7157667	1.00[CHB][hapmap]
rs72726248	1.00[AMR][1000 genomes]
rs72726253	1.00[AMR][1000 genomes]
rs72726254	1.00[AMR][1000 genomes]
rs72726257	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72726258	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72726262	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72726263	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72726265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72726266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72726269	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726271	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728205	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs911002	1.00[JPT][hapmap]
rs942625	1.00[CHB][hapmap]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65382000-65399200	Weak transcription	Esophagus	oesophagus
2	chr14:65382000-65409200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:65382200-65391600	Weak transcription	Ovary	ovary
4	chr14:65382200-65394800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:65382200-65395600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:65382400-65391600	Weak transcription	Fetal Stomach	stomach
7	chr14:65382400-65394000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr14:65382400-65409200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr14:65382400-65417400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
11	chr14:65382800-65392000	Weak transcription	Fetal Intestine Small	intestine
12	chr14:65382800-65393000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr14:65382800-65393000	Weak transcription	Right Ventricle	heart
14	chr14:65382800-65393000	Weak transcription	NHLF	lung
15	chr14:65382800-65394400	Weak transcription	Small Intestine	intestine
16	chr14:65382800-65394600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:65382800-65404200	Weak transcription	Stomach Mucosa	stomach
18	chr14:65383000-65393200	Weak transcription	Brain Hippocampus Middle	brain
19	chr14:65383000-65394800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:65383000-65419400	Weak transcription	K562	blood
21	chr14:65383800-65403800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr14:65384400-65404800	Weak transcription	Gastric	stomach
23	chr14:65385600-65393000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr14:65385600-65393000	Weak transcription	Lung	lung
25	chr14:65385600-65395800	Weak transcription	Pancreas	Pancrea
26	chr14:65386000-65393200	Weak transcription	Fetal Heart	heart
27	chr14:65386400-65409200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr14:65386600-65391600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr14:65386600-65393200	Weak transcription	NHEK	skin
30	chr14:65386600-65394200	Weak transcription	Psoas Muscle	Psoas
31	chr14:65387400-65392000	Weak transcription	Spleen	Spleen
32	chr14:65387400-65395800	Weak transcription	Aorta	Aorta
33	chr14:65388400-65394600	Strong transcription	Fetal Thymus	thymus
34	chr14:65388600-65391800	Weak transcription	A549	lung
35	chr14:65389400-65394400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr14:65389400-65395000	Strong transcription	Primary B cells from cord blood	blood
37	chr14:65389800-65394000	Strong transcription	Primary B cells from peripheral blood	blood
38	chr14:65390000-65396400	Strong transcription	HSMM	muscle
39	chr14:65390200-65399200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:65390400-65396200	Strong transcription	Liver	Liver
41	chr14:65390400-65398000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr14:65390600-65391600	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr14:65390600-65391800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr14:65390600-65391800	Strong transcription	NHDF-Ad	bronchial
45	chr14:65390600-65392000	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr14:65390600-65392200	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr14:65390600-65392200	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr14:65390600-65392800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr14:65390600-65393000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr14:65390600-65393200	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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