Variant report
| Variant | rs72726263 |
|---|---|
| Chromosome Location | chr14:65350236-65350237 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:65347011..65349276-chr14:65350145..65352997,3 | MCF-7 | breast: | |
| 2 | chr14:65346776..65351606-chr14:65355142..65358604,5 | K562 | blood: | |
| 3 | chr14:65348790..65350431-chr14:65354334..65355956,2 | K562 | blood: | |
| 4 | chr14:65289183..65290767-chr14:65349424..65351043,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000070182 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs17102244 | 1.00[AMR][1000 genomes] |
| rs17102318 | 0.86[ASN][1000 genomes] |
| rs1951496 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2182034 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs55796139 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7147408 | 0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72726248 | 1.00[AMR][1000 genomes] |
| rs72726253 | 1.00[AMR][1000 genomes] |
| rs72726254 | 1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72726257 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72726258 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72726262 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72726265 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72726266 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72726269 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72726271 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72728205 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3693408 | chr14:65292670-65358576 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv516238 | chr14:65327288-65358576 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv3693169 | chr14:65344400-65381068 | Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:65350200-65352200 | Weak transcription | K562 | blood |
