Variant report

Variant	rs55796139
Chromosome Location	chr14:65383136-65383137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65380997..65384717-chr14:65414191..65417570,3	MCF-7	breast:
2	chr14:65376372..65378588-chr14:65381042..65383849,2	K562	blood:
3	chr14:65380332..65384001-chr14:65388831..65392561,3	K562	blood:
4	chr14:65379731..65383710-chr14:65424558..65427647,5	MCF-7	breast:
5	chr14:65382279..65385178-chr14:65385744..65388338,3	K562	blood:
6	chr14:65380579..65384480-chr14:65390113..65394782,6	MCF-7	breast:
7	chr14:65376789..65378335-chr14:65383134..65384665,2	MCF-7	breast:
8	chr14:65192502..65194918-chr14:65380878..65383744,2	MCF-7	breast:
9	chr14:65133710..65135609-chr14:65381546..65383750,2	MCF-7	breast:
10	chr14:65381530..65387972-chr14:65390181..65394582,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000125954	Chromatin interaction
ENSG00000258289	Chromatin interaction
ENSG00000252497	Chromatin interaction
ENSG00000139998	Chromatin interaction
ENSG00000126822	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17102244	1.00[AMR][1000 genomes]
rs17102318	1.00[ASN][1000 genomes]
rs1951496	1.00[AMR][1000 genomes]
rs2182034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742600	0.83[AFR][1000 genomes]
rs7147408	0.82[EUR][1000 genomes]
rs72726248	1.00[AMR][1000 genomes]
rs72726253	1.00[AMR][1000 genomes]
rs72726254	1.00[AMR][1000 genomes]
rs72726257	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72726258	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72726262	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72726263	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72726265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72726266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72726269	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726271	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728205	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65381800-65383200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr14:65381800-65383200	Flanking Active TSS	Dnd41	blood
3	chr14:65381800-65386000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr14:65382000-65383200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr14:65382000-65384000	Enhancers	Spleen	Spleen
6	chr14:65382000-65384200	Weak transcription	Gastric	stomach
7	chr14:65382000-65385200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:65382000-65386400	Weak transcription	Aorta	Aorta
9	chr14:65382000-65399200	Weak transcription	Esophagus	oesophagus
10	chr14:65382000-65409200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:65382200-65383400	Enhancers	Primary B cells from peripheral blood	blood
12	chr14:65382200-65383800	Weak transcription	Left Ventricle	heart
13	chr14:65382200-65384400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr14:65382200-65385200	Weak transcription	Lung	lung
15	chr14:65382200-65386800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr14:65382200-65390800	Weak transcription	Placenta	Placenta
17	chr14:65382200-65391200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr14:65382200-65391600	Weak transcription	Ovary	ovary
19	chr14:65382200-65394800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:65382200-65395600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr14:65382400-65383200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:65382400-65383200	Enhancers	Brain Angular Gyrus	brain
23	chr14:65382400-65383200	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr14:65382400-65383400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr14:65382400-65384400	Enhancers	Primary T cells fromperipheralblood	blood
26	chr14:65382400-65384400	Weak transcription	HSMMtube	muscle
27	chr14:65382400-65384800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:65382400-65386400	Weak transcription	Right Atrium	heart
29	chr14:65382400-65387800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr14:65382400-65388400	Weak transcription	Fetal Thymus	thymus
31	chr14:65382400-65390600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:65382400-65390600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr14:65382400-65390600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr14:65382400-65390600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr14:65382400-65390600	Weak transcription	Fetal Intestine Large	intestine
36	chr14:65382400-65390800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr14:65382400-65390800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr14:65382400-65391000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr14:65382400-65391200	Weak transcription	Fetal Brain Female	brain
40	chr14:65382400-65391400	Weak transcription	Colonic Mucosa	Colon
41	chr14:65382400-65391600	Weak transcription	Fetal Stomach	stomach
42	chr14:65382400-65394000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr14:65382400-65409200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr14:65382400-65417400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
46	chr14:65382600-65383400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr14:65382600-65384600	Weak transcription	Fetal Heart	heart
48	chr14:65382600-65391200	Weak transcription	Fetal Kidney	kidney
49	chr14:65382800-65383200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr14:65382800-65383200	Enhancers	Liver	Liver

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