Variant report

Variant	rs2182583
Chromosome Location	chr9:26546738-26546739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10283726	0.86[ASN][1000 genomes]
rs10429467	0.92[ASN][1000 genomes]
rs10757612	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10812408	0.86[ASN][1000 genomes]
rs10967393	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12335816	0.86[ASN][1000 genomes]
rs1576195	0.97[ASN][1000 genomes]
rs2383695	0.94[ASN][1000 genomes]
rs34138593	0.82[EUR][1000 genomes]
rs4111166	0.83[ASN][1000 genomes]
rs4311725	0.86[ASN][1000 genomes]
rs4367638	0.97[ASN][1000 genomes]
rs4492466	0.86[ASN][1000 genomes]
rs4978076	0.83[ASN][1000 genomes]
rs56041997	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62544421	0.97[ASN][1000 genomes]
rs6475905	0.86[ASN][1000 genomes]
rs6475906	0.83[ASN][1000 genomes]
rs6475907	0.86[ASN][1000 genomes]
rs6475911	0.86[ASN][1000 genomes]
rs6475912	0.86[ASN][1000 genomes]
rs7018630	0.84[ASN][1000 genomes]
rs7020191	0.86[ASN][1000 genomes]
rs7024081	0.84[ASN][1000 genomes]
rs7038517	0.84[ASN][1000 genomes]
rs7048997	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7468895	0.90[ASN][1000 genomes]
rs9298884	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892854	chr9:26326100-26749094	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1022674	chr9:26453723-26668102	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1020439	chr9:26453723-26669855	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1022289	chr9:26453723-26670583	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2755419	chr9:26539976-26576337	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv520604	chr9:26546080-26551726	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26543200-26546800	Weak transcription	Fetal Brain Male	brain
2	chr9:26546400-26548000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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