Variant report

Variant	rs4978076
Chromosome Location	chr9:26524684-26524685
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10283726	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10429467	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10812408	0.97[ASN][1000 genomes]
rs10967393	0.84[ASN][1000 genomes]
rs12335816	0.97[ASN][1000 genomes]
rs1576195	0.83[ASN][1000 genomes]
rs2182583	0.83[ASN][1000 genomes]
rs2383695	0.86[ASN][1000 genomes]
rs4111166	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4311725	0.97[ASN][1000 genomes]
rs4367638	0.83[ASN][1000 genomes]
rs4492466	0.97[ASN][1000 genomes]
rs56041997	0.83[ASN][1000 genomes]
rs62544421	0.83[ASN][1000 genomes]
rs6475905	0.97[ASN][1000 genomes]
rs6475906	0.94[ASN][1000 genomes]
rs6475907	0.97[ASN][1000 genomes]
rs6475911	0.97[ASN][1000 genomes]
rs6475912	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7020191	0.97[ASN][1000 genomes]
rs7024081	0.98[ASN][1000 genomes]
rs7038517	0.98[ASN][1000 genomes]
rs7468895	0.86[ASN][1000 genomes]
rs9298884	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892854	chr9:26326100-26749094	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv892855	chr9:26333942-26546080	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
4	nsv1022674	chr9:26453723-26668102	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1020439	chr9:26453723-26669855	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1022289	chr9:26453723-26670583	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1029668	chr9:26486471-26531692	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26522800-26526400	Enhancers	Fetal Stomach	stomach
2	chr9:26523000-26525000	Enhancers	Brain Germinal Matrix	brain
3	chr9:26523000-26525400	Enhancers	Colon Smooth Muscle	Colon
4	chr9:26523200-26525400	Enhancers	Rectal Smooth Muscle	rectum
5	chr9:26523600-26525400	Enhancers	Fetal Muscle Leg	muscle
6	chr9:26523600-26525800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:26523600-26526000	Enhancers	Fetal Lung	lung
8	chr9:26523800-26525200	Enhancers	Fetal Kidney	kidney
9	chr9:26524000-26525200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:26524200-26525600	Enhancers	Fetal Brain Male	brain
11	chr9:26524400-26524800	Weak transcription	Fetal Brain Female	brain
12	chr9:26524600-26525400	Enhancers	Stomach Smooth Muscle	stomach

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