Variant report

Variant	rs7024081
Chromosome Location	chr9:26471249-26471250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10283726	0.95[ASN][1000 genomes]
rs10429467	0.89[ASN][1000 genomes]
rs10812408	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10967393	0.86[ASN][1000 genomes]
rs12335816	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12553602	0.80[EUR][1000 genomes]
rs12554935	0.82[EUR][1000 genomes]
rs13286262	0.80[EUR][1000 genomes]
rs1576195	0.84[ASN][1000 genomes]
rs2182583	0.84[ASN][1000 genomes]
rs2383695	0.87[ASN][1000 genomes]
rs4111166	0.98[ASN][1000 genomes]
rs4311725	0.95[ASN][1000 genomes]
rs4367638	0.84[ASN][1000 genomes]
rs4492466	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4978076	0.98[ASN][1000 genomes]
rs56041997	0.84[ASN][1000 genomes]
rs62544421	0.84[ASN][1000 genomes]
rs6475905	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6475906	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6475907	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6475911	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6475912	0.95[ASN][1000 genomes]
rs7020191	0.98[ASN][1000 genomes]
rs7038517	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7468895	0.87[ASN][1000 genomes]
rs9298884	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892854	chr9:26326100-26749094	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv892855	chr9:26333942-26546080	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
4	nsv831531	chr9:26334440-26475736	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
5	nsv1022674	chr9:26453723-26668102	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1020439	chr9:26453723-26669855	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1022289	chr9:26453723-26670583	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26471200-26471800	Enhancers	Cortex derived primary cultured neurospheres	brain

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