Variant report

Variant	rs2186070
Chromosome Location	chr10:98202220-98202221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98195304..98197453-chr10:98200808..98203342,2	K562	blood:
2	chr10:98178038..98179737-chr10:98202020..98203646,2	MCF-7	breast:
3	chr10:98189391..98191766-chr10:98198833..98202422,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1937091	1.00[EUR][1000 genomes]
rs2154204	1.00[EUR][1000 genomes]
rs2901994	1.00[EUR][1000 genomes]
rs4919017	1.00[EUR][1000 genomes]
rs6584072	1.00[EUR][1000 genomes]
rs7081009	1.00[EUR][1000 genomes]
rs7093331	1.00[EUR][1000 genomes]
rs74151348	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98199800-98202600	Enhancers	Fetal Muscle Leg	muscle
2	chr10:98200000-98202600	Enhancers	Fetal Lung	lung
3	chr10:98200200-98202600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:98200400-98202400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:98200400-98202600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr10:98200600-98202400	Enhancers	Placenta	Placenta
7	chr10:98200600-98202600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:98200600-98202600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr10:98200800-98202400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr10:98200800-98202400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr10:98200800-98202400	Enhancers	Spleen	Spleen
12	chr10:98201000-98202400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:98201000-98202400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr10:98201000-98202600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr10:98201000-98205800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:98201200-98202400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:98201200-98202600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:98201200-98202600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:98201200-98202600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:98201200-98203000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:98201400-98205000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:98201800-98202400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr10:98201800-98202400	Enhancers	Right Ventricle	heart
24	chr10:98201800-98202600	Bivalent Enhancer	Fetal Stomach	stomach
25	chr10:98201800-98206800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr10:98202000-98208000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr10:98202200-98202400	Bivalent Enhancer	Adipose Nuclei	Adipose
28	chr10:98202200-98202400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
29	chr10:98202200-98205400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:98202200-98206600	Weak transcription	Left Ventricle	heart

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