Variant report

Variant	rs6584072
Chromosome Location	chr10:98176277-98176278
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98164877..98167127-chr10:98174978..98177605,2	K562	blood:
2	chr10:98175305..98178376-chr10:98181007..98184724,4	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12244409	1.00[AMR][1000 genomes]
rs12268869	1.00[AMR][1000 genomes]
rs1937091	1.00[EUR][1000 genomes]
rs2154204	0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs2186070	1.00[EUR][1000 genomes]
rs2290713	1.00[EUR][1000 genomes]
rs2901994	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4495834	0.81[AFR][1000 genomes]
rs4919012	1.00[AMR][1000 genomes]
rs4919017	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7081009	1.00[EUR][1000 genomes]
rs7093331	1.00[EUR][1000 genomes]
rs72637510	1.00[EUR][1000 genomes]
rs74151348	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047657	chr10:98123234-98183487	Weak transcription Active TSS Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98171600-98182200	Weak transcription	Spleen	Spleen
2	chr10:98174400-98182000	Weak transcription	Right Ventricle	heart
3	chr10:98174800-98180200	Weak transcription	Left Ventricle	heart
4	chr10:98175000-98178200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:98175400-98176800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr10:98175400-98176800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr10:98175400-98176800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr10:98175400-98177000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:98175400-98177000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:98175400-98177000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:98175400-98177200	Enhancers	Colon Smooth Muscle	Colon
12	chr10:98175400-98179400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:98175600-98176400	Enhancers	Primary hematopoietic stem cells	blood
14	chr10:98175600-98176600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:98175600-98176800	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr10:98175600-98176800	Enhancers	Fetal Stomach	stomach
17	chr10:98175600-98177000	Enhancers	HMEC	breast
18	chr10:98175600-98177400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:98175600-98177400	Enhancers	Adipose Nuclei	Adipose
20	chr10:98175600-98177400	Enhancers	Brain Cingulate Gyrus	brain
21	chr10:98175600-98177400	Enhancers	HepG2	liver
22	chr10:98175600-98177600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:98175600-98177600	Enhancers	Brain Angular Gyrus	brain
24	chr10:98175600-98177600	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr10:98175600-98177600	Enhancers	Brain Substantia Nigra	brain
26	chr10:98175800-98176400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr10:98175800-98176600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:98175800-98176800	Enhancers	Thymus	Thymus
29	chr10:98175800-98177000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:98175800-98177000	Enhancers	HSMMtube	muscle
31	chr10:98175800-98177800	Enhancers	Placenta	Placenta
32	chr10:98176000-98176600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:98176000-98176800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:98176000-98176800	Enhancers	Ovary	ovary
35	chr10:98176000-98177000	Enhancers	Right Atrium	heart
36	chr10:98176000-98177400	Enhancers	Brain Anterior Caudate	brain
37	chr10:98176000-98177400	Enhancers	Fetal Muscle Trunk	muscle
38	chr10:98176000-98177400	Enhancers	Fetal Muscle Leg	muscle
39	chr10:98176000-98182000	Weak transcription	GM12878-XiMat	blood
40	chr10:98176200-98176400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr10:98176200-98176400	Flanking Active TSS	Duodenum Mucosa	Duodenum
42	chr10:98176200-98176400	Flanking Active TSS	Fetal Lung	lung
43	chr10:98176200-98176600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:98176200-98176600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:98176200-98176600	Enhancers	Brain Hippocampus Middle	brain
46	chr10:98176200-98176600	Enhancers	Fetal Thymus	thymus
47	chr10:98176200-98177000	Enhancers	Placenta Amnion	Placenta Amnion
48	chr10:98176200-98177000	Enhancers	Rectal Smooth Muscle	rectum
49	chr10:98176200-98177400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr10:98176200-98177600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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