Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1124737	0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16976860	0.83[AFR][1000 genomes]
rs16976861	0.80[AFR][1000 genomes]
rs16976863	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs16976868	0.81[YRI][hapmap]
rs16976889	0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16976897	0.91[YRI][hapmap];0.83[AMR][1000 genomes]
rs17449078	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs2191562	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs56870791	0.83[AFR][1000 genomes]
rs57500373	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs59935787	0.83[AFR][1000 genomes]
rs61277064	0.83[AFR][1000 genomes]
rs61528694	0.83[AFR][1000 genomes]
rs6509121	0.83[AFR][1000 genomes]
rs7254625	0.83[AFR][1000 genomes]
rs7260473	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs766959	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs8103693	0.83[AFR][1000 genomes]
rs8105412	0.83[AFR][1000 genomes]
rs8106317	0.83[AFR][1000 genomes]
rs8107364	0.83[AFR][1000 genomes]
rs8108832	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458710	chr19:44339960-44410846	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv579853	chr19:44339960-44410846	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv912108	chr19:44358761-44435167	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv469650	chr19:44405994-44555426	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44404000-44434800	ZNF genes & repeats	Liver	Liver
2	chr19:44406200-44408600	ZNF genes & repeats	Fetal Lung	lung
3	chr19:44406400-44408000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr19:44406800-44413200	Weak transcription	Right Ventricle	heart
5	chr19:44406800-44416800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr19:44406800-44417000	Weak transcription	HSMM	muscle
7	chr19:44406800-44418400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr19:44406800-44427400	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr19:44407000-44417000	Weak transcription	Fetal Heart	heart
10	chr19:44407400-44408200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr19:44407400-44408400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr19:44407400-44408400	ZNF genes & repeats	Brain Substantia Nigra	brain
13	chr19:44407400-44427600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
14	chr19:44407600-44408000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
15	chr19:44407600-44408000	ZNF genes & repeats	Psoas Muscle	Psoas
16	chr19:44407600-44408200	ZNF genes & repeats	Brain Anterior Caudate	brain
17	chr19:44407600-44408200	ZNF genes & repeats	Colon Smooth Muscle	Colon
18	chr19:44407600-44408200	Active TSS	Rectal Smooth Muscle	rectum
19	chr19:44407800-44408400	ZNF genes & repeats	Ovary	ovary

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