Variant report
| Variant | rs2194208 |
|---|---|
| Chromosome Location | chr5:41288252-41288253 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10043106 | 0.88[ASN][1000 genomes] |
| rs10077373 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10078083 | 0.92[ASN][1000 genomes] |
| rs10214335 | 0.90[ASN][1000 genomes] |
| rs10462015 | 0.80[ASN][1000 genomes] |
| rs10462016 | 0.84[ASN][1000 genomes] |
| rs11745204 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11749734 | 0.90[ASN][1000 genomes] |
| rs1348603 | 0.92[ASN][1000 genomes] |
| rs16871155 | 0.83[ASN][1000 genomes] |
| rs16871172 | 0.92[ASN][1000 genomes] |
| rs16871178 | 0.92[ASN][1000 genomes] |
| rs61651656 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6895073 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs72755939 | 0.84[ASN][1000 genomes] |
| rs72755946 | 0.85[ASN][1000 genomes] |
| rs72755951 | 0.90[ASN][1000 genomes] |
| rs7711831 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7736485 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs959808 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv427717 | chr5:41201377-41369202 | Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv830269 | chr5:41209113-41393536 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv880314 | chr5:41271606-41298726 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | esv1800575 | chr5:41271985-41288302 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:41287600-41290000 | Weak transcription | Fetal Intestine Small | intestine |
