Variant report

Variant	rs16871172
Chromosome Location	chr5:41283069-41283070
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41281876..41284004-chr5:41284235..41287171,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10043106	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10077373	0.91[ASN][1000 genomes]
rs10078083	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10214335	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10462015	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10462016	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10462017	1.00[CEU][hapmap]
rs10512774	1.00[CEU][hapmap]
rs10512775	1.00[CEU][hapmap]
rs11737958	1.00[CEU][hapmap]
rs11740787	1.00[CEU][hapmap]
rs11744499	1.00[CEU][hapmap]
rs11745204	0.92[ASN][1000 genomes]
rs11747859	1.00[CEU][hapmap]
rs11749734	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1348603	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1373639	1.00[CEU][hapmap]
rs1460953	1.00[CEU][hapmap]
rs161086	0.82[CEU][hapmap]
rs1645060	0.82[CEU][hapmap]
rs167628	0.82[CEU][hapmap]
rs16871155	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16871178	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871219	1.00[CEU][hapmap]
rs16871220	1.00[CEU][hapmap]
rs16871222	1.00[CEU][hapmap]
rs16871258	1.00[CEU][hapmap]
rs16871269	1.00[CEU][hapmap]
rs1904178	1.00[CEU][hapmap]
rs2054445	1.00[CEU][hapmap]
rs2161542	1.00[CEU][hapmap]
rs2194208	0.92[ASN][1000 genomes]
rs223080	0.82[CEU][hapmap]
rs2329601	1.00[CEU][hapmap]
rs2329602	1.00[CEU][hapmap]
rs2329604	1.00[CEU][hapmap]
rs2329671	1.00[CEU][hapmap]
rs2860000	1.00[CEU][hapmap]
rs2925729	0.82[CEU][hapmap]
rs2925731	0.82[CEU][hapmap]
rs318844	0.82[CEU][hapmap]
rs320623	0.82[CEU][hapmap]
rs4403222	0.82[CEU][hapmap]
rs4557464	0.82[CEU][hapmap]
rs4957153	1.00[CEU][hapmap]
rs4957390	1.00[CEU][hapmap]
rs61651656	0.83[ASN][1000 genomes]
rs6859578	0.82[CEU][hapmap]
rs6895073	0.83[ASN][1000 genomes]
rs72755939	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72755946	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72755951	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73750112	0.83[AFR][1000 genomes]
rs765176	1.00[CEU][hapmap]
rs765177	1.00[CEU][hapmap]
rs7701760	1.00[CEU][hapmap]
rs7703589	1.00[CEU][hapmap]
rs7704046	1.00[CEU][hapmap]
rs7711831	0.85[ASN][1000 genomes]
rs7722338	0.82[CEU][hapmap]
rs7723649	1.00[CEU][hapmap]
rs7727658	1.00[CEU][hapmap]
rs7729454	1.00[CEU][hapmap]
rs7735604	1.00[CEU][hapmap]
rs7736485	0.89[ASN][1000 genomes]
rs959808	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv880314	chr5:41271606-41298726	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv1800575	chr5:41271985-41288302	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41282000-41285800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr5:41282600-41283600	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links