Variant report

Variant	rs2197885
Chromosome Location	chr13:39327417-39327418
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17058452	0.86[ASN][1000 genomes]
rs2218720	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2496394	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57806954	0.95[ASN][1000 genomes]
rs58673863	0.95[ASN][1000 genomes]
rs60698466	0.86[ASN][1000 genomes]
rs6563631	0.86[ASN][1000 genomes]
rs7984232	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39298200-39339600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:39322800-39337200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr13:39323200-39327800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:39325000-39328400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:39325200-39328800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr13:39325400-39328600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr13:39325400-39328800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr13:39325800-39332600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:39326200-39329000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr13:39326200-39332600	Weak transcription	Brain Germinal Matrix	brain
11	chr13:39326400-39336000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr13:39326800-39328600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr13:39326800-39328800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr13:39326800-39328800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr13:39326800-39328800	Enhancers	HMEC	breast
16	chr13:39326800-39329000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr13:39326800-39332400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr13:39327000-39327800	Enhancers	Colon Smooth Muscle	Colon
19	chr13:39327000-39328800	Enhancers	NHEK	skin
20	chr13:39327200-39327600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr13:39327200-39329400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr13:39327400-39328800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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