Variant report

No.	Distal block	Cell Line	Cell type
1	chr13:39259311..39261870-chr13:39284764..39287321,2	MCF-7	breast:
2	chr13:39283866..39286601-chr13:39329962..39331985,2	MCF-7	breast:
3	chr13:39283427..39285994-chr13:39289808..39291508,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150893	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11147726	0.83[AFR][1000 genomes]
rs11147727	0.83[AFR][1000 genomes]
rs11147728	0.83[AFR][1000 genomes]
rs17058420	0.82[AFR][1000 genomes]
rs17058423	0.83[AFR][1000 genomes]
rs17058430	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs17058443	0.84[AFR][1000 genomes]
rs2197885	0.86[ASN][1000 genomes]
rs2218720	0.81[ASN][1000 genomes]
rs2496394	0.83[ASN][1000 genomes]
rs57001791	0.83[AFR][1000 genomes]
rs57806954	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58673863	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59939899	0.83[AFR][1000 genomes]
rs60698466	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6563630	0.83[AFR][1000 genomes]
rs6563631	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7336865	0.84[AFR][1000 genomes]
rs7984232	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7997838	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs7999409	0.83[AFR][1000 genomes]
rs8002488	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39265800-39287200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:39276400-39286800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:39277200-39286800	Weak transcription	Fetal Lung	lung
4	chr13:39279200-39294600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr13:39282200-39293200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:39283400-39300200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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