Variant report

Variant	rs11147727
Chromosome Location	chr13:39298093-39298094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11147726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11147728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17058420	0.91[AFR][1000 genomes]
rs17058423	0.92[AFR][1000 genomes]
rs17058430	0.94[YRI][hapmap];0.92[AFR][1000 genomes]
rs17058443	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17058452	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs17058513	0.96[AFR][1000 genomes]
rs57001791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59255961	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59939899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60698466	0.81[AFR][1000 genomes]
rs6563630	0.92[AFR][1000 genomes]
rs7320181	1.00[AMR][1000 genomes]
rs7336865	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7984183	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7984232	0.89[YRI][hapmap]
rs7997838	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7999409	0.92[AFR][1000 genomes]
rs8002488	0.92[AFR][1000 genomes]
rs895899	1.00[AMR][1000 genomes]
rs9671014	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39283400-39300200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:39294800-39325000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr13:39297800-39298200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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