Variant report

No.	Distal block	Cell Line	Cell type
1	chr13:39231190..39232700-chr13:39254187..39256443,2	MCF-7	breast:
2	chr13:39253613..39255894-chr13:39257776..39259619,2	MCF-7	breast:
3	chr13:39247746..39250614-chr13:39252343..39255149,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11147726	0.91[AFR][1000 genomes]
rs11147727	0.91[AFR][1000 genomes]
rs11147728	0.91[AFR][1000 genomes]
rs17058423	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17058430	0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17058443	0.97[AFR][1000 genomes]
rs17058452	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs17058513	0.87[AFR][1000 genomes]
rs41418944	0.81[AFR][1000 genomes]
rs56359648	0.83[AMR][1000 genomes]
rs57001791	0.91[AFR][1000 genomes]
rs59255961	0.90[AFR][1000 genomes]
rs59593155	1.00[AMR][1000 genomes]
rs59939899	0.91[AFR][1000 genomes]
rs60698466	0.84[AFR][1000 genomes]
rs6563630	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7336865	0.97[AFR][1000 genomes]
rs7982877	1.00[AMR][1000 genomes]
rs7984183	0.84[AFR][1000 genomes]
rs7984232	0.89[YRI][hapmap]
rs7997838	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7999409	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8002488	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9671014	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39253000-39256000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:39253200-39259000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr13:39253400-39255000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:39253800-39254400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr13:39253800-39254400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr13:39254000-39254400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr13:39254000-39254400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr13:39254000-39254400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr13:39254000-39254400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr13:39254000-39254600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr13:39254000-39254600	Enhancers	H9 Cell Line	embryonic stem cell
12	chr13:39254000-39255800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:39254200-39254400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr13:39254200-39256200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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