Variant report

Variant	rs17058443
Chromosome Location	chr13:39266729-39266730
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39265549..39268944-chr13:39270203..39272891,3	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11147726	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11147727	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11147728	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17058420	0.97[AFR][1000 genomes]
rs17058423	0.99[AFR][1000 genomes]
rs17058430	0.95[YRI][hapmap];0.99[AFR][1000 genomes]
rs17058452	0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs17058513	0.90[AFR][1000 genomes]
rs41418944	0.81[AFR][1000 genomes]
rs57001791	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59255961	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59939899	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60698466	0.87[AFR][1000 genomes]
rs6563630	0.99[AFR][1000 genomes]
rs6563631	0.80[AFR][1000 genomes]
rs7320181	1.00[AMR][1000 genomes]
rs7336865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7984183	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7984232	0.90[YRI][hapmap]
rs7997838	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs7999409	0.99[AFR][1000 genomes]
rs8002488	0.99[AFR][1000 genomes]
rs895899	1.00[AMR][1000 genomes]
rs9671014	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39262200-39267400	Weak transcription	Psoas Muscle	Psoas
2	chr13:39262600-39267000	Weak transcription	Fetal Heart	heart
3	chr13:39263400-39268000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr13:39263600-39267600	Weak transcription	Fetal Kidney	kidney
5	chr13:39263600-39275400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:39263800-39267400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:39263800-39275400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr13:39264000-39268400	Weak transcription	Fetal Intestine Small	intestine
9	chr13:39264000-39268800	Weak transcription	Fetal Intestine Large	intestine
10	chr13:39264000-39271000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr13:39264200-39266800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr13:39264200-39267400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr13:39264200-39267800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr13:39264200-39276800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr13:39264400-39271000	Weak transcription	Fetal Muscle Leg	muscle
16	chr13:39264400-39275800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr13:39264600-39270600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
18	chr13:39264800-39267400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr13:39265200-39267600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr13:39265400-39267600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr13:39265400-39275400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr13:39265800-39266800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr13:39265800-39267400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr13:39265800-39287200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr13:39266200-39267000	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr13:39266200-39267600	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr13:39266200-39268000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr13:39266200-39268600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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