Variant report

Variant	rs7984232
Chromosome Location	chr13:39258446-39258447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17058423	0.80[AFR][1000 genomes]
rs17058430	0.86[YRI][hapmap];0.80[AFR][1000 genomes]
rs17058452	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2197885	0.82[ASN][1000 genomes]
rs57806954	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58673863	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60698466	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6563630	0.80[AFR][1000 genomes]
rs6563631	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7997838	0.89[YRI][hapmap];0.80[AFR][1000 genomes]
rs7999409	0.80[AFR][1000 genomes]
rs8002488	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39253200-39259000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr13:39254400-39259000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr13:39254400-39259600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr13:39254400-39259600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr13:39254400-39259600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr13:39255200-39259800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr13:39255200-39260200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr13:39255400-39259600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr13:39255800-39259400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:39255800-39260200	Weak transcription	Adipose Nuclei	Adipose
11	chr13:39256000-39259000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr13:39256200-39259000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr13:39257800-39260000	Enhancers	Fetal Intestine Large	intestine
14	chr13:39258000-39260400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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