Variant report

Variant	rs7320181
Chromosome Location	chr13:39313889-39313890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11147726	1.00[AMR][1000 genomes]
rs11147727	1.00[AMR][1000 genomes]
rs11147728	1.00[AMR][1000 genomes]
rs17058443	1.00[AMR][1000 genomes]
rs57001791	1.00[AMR][1000 genomes]
rs57806954	0.88[AFR][1000 genomes]
rs58673863	0.88[AFR][1000 genomes]
rs59255961	1.00[AMR][1000 genomes]
rs59939899	1.00[AMR][1000 genomes]
rs7336865	1.00[AMR][1000 genomes]
rs7984183	1.00[AMR][1000 genomes]
rs7992018	0.93[AFR][1000 genomes]
rs7997838	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs895899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7320181	CGN	trans	lymphoblastoid	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39294800-39325000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:39298200-39339600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr13:39308000-39317600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:39310800-39325400	Weak transcription	Fetal Kidney	kidney
5	chr13:39312200-39319800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr13:39313800-39314000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:39313800-39314000	Enhancers	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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