Variant report

Variant	rs9671014
Chromosome Location	chr13:39250749-39250750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11147726	0.81[AFR][1000 genomes]
rs11147727	0.81[AFR][1000 genomes]
rs11147728	0.81[AFR][1000 genomes]
rs17058420	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17058423	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17058430	0.86[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17058443	0.87[AFR][1000 genomes]
rs41418944	0.93[AFR][1000 genomes]
rs56359648	0.83[AMR][1000 genomes]
rs57001791	0.81[AFR][1000 genomes]
rs59593155	1.00[AMR][1000 genomes]
rs59939899	0.81[AFR][1000 genomes]
rs6563630	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7336865	0.87[AFR][1000 genomes]
rs7982877	1.00[AMR][1000 genomes]
rs7997838	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7999409	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8002488	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39248800-39254000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr13:39248800-39254000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:39248800-39254200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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