Variant report

Variant	rs2203242
Chromosome Location	chr3:18117829-18117830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs34590963	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4130063	0.88[ASN][1000 genomes]
rs4132218	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4688898	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4688899	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4688913	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790525	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7627583	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7645289	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9809015	0.85[ASN][1000 genomes]
rs9846000	0.88[ASN][1000 genomes]
rs9857811	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9859212	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9861146	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18102200-18127200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:18106200-18118800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:18109600-18121200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:18109800-18118600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:18114000-18127200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:18117200-18119200	Enhancers	Dnd41	blood
7	chr3:18117200-18119400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:18117200-18119400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:18117200-18121400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:18117400-18118000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:18117400-18118800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:18117600-18118200	Enhancers	NHDF-Ad	bronchial
13	chr3:18117600-18118400	Enhancers	Fetal Heart	heart
14	chr3:18117600-18119800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:18117800-18118000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr3:18117800-18118000	Enhancers	Pancreas	Pancrea
17	chr3:18117800-18119200	Enhancers	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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