Variant report

Variant	rs4688899
Chromosome Location	chr3:18114039-18114040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1355724	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2203242	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34590963	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4130063	0.88[ASN][1000 genomes]
rs4132218	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4688898	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4688913	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790525	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7627583	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7645289	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9809015	0.85[ASN][1000 genomes]
rs9846000	0.88[ASN][1000 genomes]
rs9857811	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9859212	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9861146	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18102200-18127200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:18105600-18117800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:18106200-18118800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:18109600-18121200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:18109800-18117400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:18109800-18118600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:18111800-18117200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:18112000-18114400	Enhancers	Dnd41	blood
9	chr3:18112000-18117600	Weak transcription	NHDF-Ad	bronchial
10	chr3:18112200-18117600	Weak transcription	Fetal Heart	heart
11	chr3:18113600-18114200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:18113800-18114800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:18113800-18115400	Weak transcription	HMEC	breast
14	chr3:18114000-18114200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr3:18114000-18114200	Enhancers	Fetal Thymus	thymus
16	chr3:18114000-18127200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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