Variant report

Variant	rs2205161
Chromosome Location	chr14:78729556-78729557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1008306	0.96[AMR][1000 genomes]
rs10132342	1.00[AFR][1000 genomes]
rs10483896	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes]
rs12880388	0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes]
rs1473671	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1967433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7145595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149373	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes]
rs8003110	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8009291	1.00[CHB][hapmap];0.93[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2205161	TSHR	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78710200-78729800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:78721800-78730400	Weak transcription	Brain Angular Gyrus	brain
3	chr14:78722000-78729800	Weak transcription	Brain Germinal Matrix	brain
4	chr14:78724600-78730600	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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