Variant report

Variant	rs8003110
Chromosome Location	chr14:78716226-78716227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1008306	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10483896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12880388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1473671	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1967433	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs213568	0.85[CEU][hapmap]
rs2205161	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7145595	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7149373	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8009291	1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8003110	TSHR	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78705200-78721600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:78710200-78729800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:78714200-78716400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:78714400-78717200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr14:78715200-78721200	Weak transcription	Brain Angular Gyrus	brain
6	chr14:78715400-78721200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:78715600-78719400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:78716000-78717000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:78716000-78720000	Enhancers	Brain Germinal Matrix	brain
10	chr14:78716000-78721600	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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