Variant report
| Variant | rs2205348 |
|---|---|
| Chromosome Location | chr3:60802301-60802302 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs2142296 | 0.84[AMR][1000 genomes] |
| rs2205353 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2251704 | 0.88[AMR][1000 genomes] |
| rs2251707 | 0.88[AMR][1000 genomes] |
| rs2594159 | 0.84[AMR][1000 genomes] |
| rs2594160 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs2594162 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2594163 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2594164 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2594165 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2594167 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2594168 | 0.86[AMR][1000 genomes] |
| rs2594169 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2594170 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2594171 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2736731 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2736734 | 0.85[AMR][1000 genomes] |
| rs2736736 | 0.84[AMR][1000 genomes] |
| rs4974230 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6762120 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6762122 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6764320 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6797903 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9754707 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs9823013 | 0.90[AFR][1000 genomes];0.80[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529602 | chr3:60088353-60830769 | Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv998815 | chr3:60495872-60830769 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv534038 | chr3:60781917-60993082 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2757872 | chr3:60781943-61019003 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv2759152 | chr3:60781943-61220809 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:60800200-60807600 | Weak transcription | Ovary | ovary |
