Variant report

Variant	rs6762122
Chromosome Location	chr3:60781899-60781900
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11130782	0.81[ASN][1000 genomes]
rs11710207	0.81[ASN][1000 genomes]
rs13059280	0.81[ASN][1000 genomes]
rs13065371	0.81[ASN][1000 genomes]
rs13098348	0.81[ASN][1000 genomes]
rs13098466	0.81[ASN][1000 genomes]
rs13098545	0.81[ASN][1000 genomes]
rs13099811	0.81[ASN][1000 genomes]
rs2142296	0.85[AMR][1000 genomes]
rs2205343	0.81[ASN][1000 genomes]
rs2205344	0.81[ASN][1000 genomes]
rs2205348	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2205353	0.84[EUR][1000 genomes]
rs2251704	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2251707	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2594159	0.85[AMR][1000 genomes]
rs2594160	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2594162	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2594163	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2594164	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2594165	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2594167	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2594168	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2594169	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2594170	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2594171	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2736731	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2736734	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2736736	0.85[AMR][1000 genomes]
rs4974230	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4974240	0.88[ASN][1000 genomes]
rs57203484	0.81[ASN][1000 genomes]
rs57595293	0.81[ASN][1000 genomes]
rs6762120	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6764320	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6786213	0.84[ASN][1000 genomes]
rs6797903	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9754707	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9823013	0.84[ASN][1000 genomes]
rs9878766	0.84[ASN][1000 genomes]
rs9878801	0.97[ASN][1000 genomes]
rs9882068	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60767000-60782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:60778800-60787800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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