Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:60766983..60769190-chr3:60776208..60778636,2	K562	blood:

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11130782	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs11710207	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs13059280	0.93[CHB][hapmap];0.83[JPT][hapmap]
rs13065371	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs13067083	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs13073028	0.87[CHB][hapmap]
rs13098466	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs13099811	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs2205342	0.87[CHB][hapmap]
rs2205343	0.93[CHB][hapmap];0.83[JPT][hapmap]
rs2205344	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs2251704	0.94[ASN][1000 genomes]
rs2594160	0.95[ASN][1000 genomes]
rs2594162	0.94[ASN][1000 genomes]
rs2594164	0.94[ASN][1000 genomes]
rs2594165	0.94[ASN][1000 genomes]
rs2594167	0.95[ASN][1000 genomes]
rs2594169	0.95[ASN][1000 genomes]
rs2594170	0.98[ASN][1000 genomes]
rs2594171	0.98[ASN][1000 genomes]
rs2736731	0.98[ASN][1000 genomes]
rs4974227	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs4974230	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs4974240	0.92[ASN][1000 genomes]
rs6762120	0.98[ASN][1000 genomes]
rs6762122	0.97[ASN][1000 genomes]
rs6764320	0.98[ASN][1000 genomes]
rs6786213	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6797903	0.95[ASN][1000 genomes]
rs7429680	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs9754707	0.98[ASN][1000 genomes]
rs9823013	0.82[CHB][hapmap];0.86[ASN][1000 genomes]
rs9878766	0.83[CHB][hapmap];0.86[ASN][1000 genomes]
rs9881274	0.93[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs9882068	0.93[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60767000-60782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:60776000-60778200	Weak transcription	Brain Germinal Matrix	brain
3	chr3:60776600-60778000	Enhancers	Fetal Heart	heart
4	chr3:60777600-60778800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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