Variant report

Variant	rs4974240
Chromosome Location	chr3:60775183-60775184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2142296	0.81[EUR][1000 genomes]
rs2251704	0.85[ASN][1000 genomes]
rs2594159	0.81[EUR][1000 genomes]
rs2594160	0.86[ASN][1000 genomes]
rs2594162	0.85[ASN][1000 genomes]
rs2594164	0.85[ASN][1000 genomes]
rs2594165	0.85[ASN][1000 genomes]
rs2594167	0.86[ASN][1000 genomes]
rs2594169	0.86[ASN][1000 genomes]
rs2594170	0.90[ASN][1000 genomes]
rs2594171	0.90[ASN][1000 genomes]
rs2736731	0.90[ASN][1000 genomes]
rs2736736	0.81[EUR][1000 genomes]
rs6762120	0.90[ASN][1000 genomes]
rs6762122	0.88[ASN][1000 genomes]
rs6764320	0.90[ASN][1000 genomes]
rs6786213	0.80[EUR][1000 genomes]
rs6797903	0.86[ASN][1000 genomes]
rs9754707	0.90[ASN][1000 genomes]
rs9823013	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9878766	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9878801	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60767000-60782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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