Variant report

Variant	rs2207059
Chromosome Location	chr1:173087552-173087553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10489271	0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12401349	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12405785	0.90[AMR][1000 genomes]
rs12406059	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16828402	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845400	0.97[ASN][1000 genomes]
rs16845403	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16845405	1.00[EUR][1000 genomes]
rs16845438	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845442	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2207057	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2422273	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3820653	0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4916206	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4916298	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4916303	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4916305	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714991	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173081600-173091200	Weak transcription	NHDF-Ad	bronchial
2	chr1:173082400-173091200	Weak transcription	NHLF	lung
3	chr1:173082800-173091000	Weak transcription	HSMM	muscle
4	chr1:173084400-173091000	Weak transcription	Fetal Intestine Large	intestine
5	chr1:173085800-173087600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:173086400-173088800	Enhancers	Primary B cells from peripheral blood	blood
7	chr1:173086400-173089000	Enhancers	Primary B cells from cord blood	blood
8	chr1:173086600-173091400	Weak transcription	Fetal Heart	heart
9	chr1:173086600-173091800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:173087000-173087600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:173087000-173091000	Weak transcription	Fetal Lung	lung
12	chr1:173087000-173091000	Weak transcription	HUVEC	blood vessel
13	chr1:173087400-173087600	Enhancers	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links