Variant report

Variant	rs16845403
Chromosome Location	chr1:173062064-173062065
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10489271	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12401349	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12405785	0.82[AMR][1000 genomes]
rs12406059	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16828402	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16845400	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845438	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16845442	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2207057	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2207059	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2422273	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3820653	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4916206	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916298	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4916303	1.00[ASN][1000 genomes]
rs4916305	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6682126	1.00[CEU][hapmap]
rs714991	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7529929	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173061400-173062200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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