Variant report

Variant	rs4916206
Chromosome Location	chr1:173063219-173063220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10489271	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12401349	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12405785	0.82[AMR][1000 genomes]
rs12406059	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16828402	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16845400	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845403	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845438	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16845442	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2207057	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2207059	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2422273	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3820653	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4916298	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4916303	1.00[ASN][1000 genomes]
rs4916305	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs714991	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173062200-173063400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:173062400-173066600	Enhancers	NHDF-Ad	bronchial
3	chr1:173062600-173063400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:173062600-173066400	Enhancers	HMEC	breast
5	chr1:173063000-173063400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:173063000-173066400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:173063200-173063600	Enhancers	Osteobl	bone
8	chr1:173063200-173063800	Weak transcription	HSMM	muscle
9	chr1:173063200-173064200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:173063200-173066000	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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