Variant report

Variant	rs221484
Chromosome Location	chr14:80097974-80097975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs170251	0.86[ASN][1000 genomes]
rs172711	0.93[EUR][1000 genomes]
rs178350	0.86[ASN][1000 genomes]
rs1816146	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs182610	0.93[EUR][1000 genomes]
rs184347	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs191991	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs221436	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs221437	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs221439	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs221440	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs221442	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs221443	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs221444	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs221445	0.86[EUR][1000 genomes]
rs221446	0.84[EUR][1000 genomes]
rs221447	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs221448	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs221449	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs221450	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs221452	0.88[EUR][1000 genomes]
rs221455	0.90[EUR][1000 genomes]
rs221456	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs221459	0.90[EUR][1000 genomes]
rs221462	0.85[ASN][1000 genomes]
rs221463	0.86[ASN][1000 genomes]
rs221464	0.86[ASN][1000 genomes]
rs221466	0.86[ASN][1000 genomes]
rs221471	0.93[EUR][1000 genomes]
rs221474	0.89[EUR][1000 genomes]
rs221481	0.93[EUR][1000 genomes]
rs221482	0.93[EUR][1000 genomes]
rs221483	0.93[EUR][1000 genomes]
rs221511	0.90[EUR][1000 genomes]
rs221512	0.90[EUR][1000 genomes]
rs221513	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs221514	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2543584	0.89[EUR][1000 genomes]
rs69029	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs918937	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9323675	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80095000-80098600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:80096600-80099600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr14:80097200-80098000	Enhancers	Placenta	Placenta
4	chr14:80097600-80098000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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