Variant report

Variant	rs9323675
Chromosome Location	chr14:80134631-80134632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs170251	0.87[CHB][hapmap]
rs17109649	0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs178351	0.80[CEU][hapmap]
rs184347	0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs221436	0.98[ASN][1000 genomes]
rs221437	0.94[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs221439	0.96[ASN][1000 genomes]
rs221440	0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs221442	0.98[ASN][1000 genomes]
rs221443	0.94[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs221444	0.98[ASN][1000 genomes]
rs221447	0.94[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs221448	0.96[ASN][1000 genomes]
rs221449	0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs221450	0.95[ASN][1000 genomes]
rs221451	0.80[CEU][hapmap];0.89[EUR][1000 genomes]
rs221453	0.80[CEU][hapmap];0.89[EUR][1000 genomes]
rs221456	0.84[CHB][hapmap];0.89[ASN][1000 genomes]
rs221457	0.80[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs221466	0.88[CHB][hapmap]
rs221476	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs221477	0.80[CEU][hapmap]
rs221479	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs221480	0.87[EUR][1000 genomes]
rs221484	0.88[ASN][1000 genomes]
rs221485	0.80[CEU][hapmap];0.87[EUR][1000 genomes]
rs221491	0.80[CEU][hapmap];0.91[TSI][hapmap]
rs221497	0.80[CEU][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs221499	0.88[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap]
rs221501	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs221502	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs221507	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs221510	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs221514	0.88[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs221516	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs69029	0.94[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs763478	0.82[TSI][hapmap]
rs918937	0.88[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9323675	C14orf4	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80113200-80135400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:80129200-80135400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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