Variant report

Variant	rs221445
Chromosome Location	chr14:80124905-80124906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10483929	0.85[YRI][hapmap]
rs170253	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17109638	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17109649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs172711	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs178351	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1816146	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs182610	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs184347	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs191991	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs221436	0.92[EUR][1000 genomes]
rs221437	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs221439	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs221440	0.89[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs221442	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs221443	0.89[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs221444	0.92[EUR][1000 genomes]
rs221446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs221447	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs221448	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs221449	0.90[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs221450	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs221451	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs221452	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs221453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs221455	0.91[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs221456	0.89[EUR][1000 genomes]
rs221457	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs221459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs221465	0.90[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs221467	0.89[ASN][1000 genomes]
rs221468	0.88[ASN][1000 genomes]
rs221469	0.83[ASN][1000 genomes]
rs221471	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs221473	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs221474	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs221475	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs221476	0.85[CEU][hapmap]
rs221477	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs221479	0.90[CEU][hapmap]
rs221480	0.91[ASN][1000 genomes]
rs221481	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs221482	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs221483	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs221484	0.86[EUR][1000 genomes]
rs221485	0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs221486	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs221487	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs221488	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs221489	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs221491	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs221492	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs221493	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs221494	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs221497	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs221498	0.89[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs221500	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs221501	0.85[CEU][hapmap]
rs221502	0.85[CEU][hapmap]
rs221503	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs221505	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs221507	0.85[CEU][hapmap]
rs221509	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs221510	0.85[CEU][hapmap]
rs221511	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs221512	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs221513	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs221514	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs221516	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2543584	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55933035	0.99[ASN][1000 genomes]
rs69029	0.90[CEU][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs918937	0.84[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80113200-80135400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:80124400-80125200	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr14:80124800-80125000	Enhancers	Brain Substantia Nigra	brain
4	chr14:80124800-80126200	Enhancers	Fetal Muscle Leg	muscle

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