Variant report

Variant	rs55933035
Chromosome Location	chr14:80124727-80124728
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17109649	0.93[ASN][1000 genomes]
rs172711	0.89[ASN][1000 genomes]
rs17836260	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1816146	0.89[ASN][1000 genomes]
rs182610	0.89[ASN][1000 genomes]
rs191991	0.89[ASN][1000 genomes]
rs221445	0.99[ASN][1000 genomes]
rs221446	0.96[ASN][1000 genomes]
rs221451	0.96[ASN][1000 genomes]
rs221452	0.96[ASN][1000 genomes]
rs221453	0.97[ASN][1000 genomes]
rs221455	0.91[ASN][1000 genomes]
rs221457	0.96[ASN][1000 genomes]
rs221459	0.94[ASN][1000 genomes]
rs221465	0.86[ASN][1000 genomes]
rs221467	0.88[ASN][1000 genomes]
rs221468	0.87[ASN][1000 genomes]
rs221469	0.82[ASN][1000 genomes]
rs221471	0.93[ASN][1000 genomes]
rs221473	0.93[ASN][1000 genomes]
rs221474	0.80[ASN][1000 genomes]
rs221480	0.90[ASN][1000 genomes]
rs221481	0.90[ASN][1000 genomes]
rs221482	0.90[ASN][1000 genomes]
rs221483	0.89[ASN][1000 genomes]
rs221485	0.91[ASN][1000 genomes]
rs221497	0.87[ASN][1000 genomes]
rs221511	0.87[ASN][1000 genomes]
rs221512	0.85[ASN][1000 genomes]
rs221513	0.85[ASN][1000 genomes]
rs221516	0.82[ASN][1000 genomes]
rs2543584	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80113200-80135400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:80122800-80124800	Weak transcription	Fetal Muscle Leg	muscle
3	chr14:80124400-80125200	Enhancers	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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