Variant report

Variant	rs2215139
Chromosome Location	chr7:108243793-108243794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17155919	1.00[EUR][1000 genomes]
rs17155937	1.00[EUR][1000 genomes]
rs17155982	1.00[EUR][1000 genomes]
rs17155985	1.00[EUR][1000 genomes]
rs2215140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6949765	1.00[EUR][1000 genomes]
rs6970232	1.00[EUR][1000 genomes]
rs6970387	1.00[EUR][1000 genomes]
rs6974946	1.00[EUR][1000 genomes]
rs7789721	1.00[EUR][1000 genomes]
rs978623	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108234800-108244000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:108239800-108244200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:108239800-108244200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:108240000-108244200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:108240000-108244200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:108240200-108244000	Weak transcription	Fetal Brain Female	brain
7	chr7:108240400-108244400	Weak transcription	Brain Germinal Matrix	brain
8	chr7:108240400-108245600	Weak transcription	Fetal Brain Male	brain
9	chr7:108243000-108245400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:108243600-108244800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:108243600-108246200	Enhancers	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links