Variant report

Variant	rs6949765
Chromosome Location	chr7:108246915-108246916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17155919	1.00[EUR][1000 genomes]
rs17155937	1.00[EUR][1000 genomes]
rs17155982	1.00[EUR][1000 genomes]
rs17155985	1.00[EUR][1000 genomes]
rs2215139	1.00[EUR][1000 genomes]
rs2215140	1.00[EUR][1000 genomes]
rs6970232	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6970387	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6974946	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7789721	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108244400-108247800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:108246000-108251400	Weak transcription	Brain Germinal Matrix	brain
3	chr7:108246200-108251000	Weak transcription	Placenta	Placenta
4	chr7:108246800-108247000	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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