Variant report

Variant	rs7789721
Chromosome Location	chr7:108258475-108258476
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17155919	1.00[EUR][1000 genomes]
rs17155937	1.00[EUR][1000 genomes]
rs17155982	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155985	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2215139	1.00[EUR][1000 genomes]
rs2215140	1.00[EUR][1000 genomes]
rs6949765	1.00[EUR][1000 genomes]
rs6970232	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6970387	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6974946	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108254200-108258600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:108254600-108258600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:108255600-108259800	Weak transcription	Fetal Brain Male	brain
4	chr7:108257800-108270800	Weak transcription	Right Atrium	heart
5	chr7:108258000-108259000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr7:108258000-108259000	Enhancers	Liver	Liver
7	chr7:108258200-108259000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr7:108258200-108259400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:108258200-108259600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:108258200-108259600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:108258200-108261000	Enhancers	Adipose Nuclei	Adipose
12	chr7:108258400-108259000	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links