Variant report

Variant	rs2215502
Chromosome Location	chr18:25784019-25784020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11659841	0.84[ASN][1000 genomes]
rs1988880	0.90[ASN][1000 genomes]
rs1990414	0.84[ASN][1000 genomes]
rs2109627	0.84[ASN][1000 genomes]
rs8085425	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9945455	0.83[ASN][1000 genomes]
rs9948832	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv9622	chr18:25749905-26032816	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25783000-25784800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr18:25783200-25784800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr18:25783600-25784600	Enhancers	Primary hematopoietic stem cells	blood
4	chr18:25783600-25784800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr18:25783800-25784400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr18:25783800-25784400	Enhancers	NH-A	brain
7	chr18:25783800-25784800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr18:25783800-25784800	Enhancers	A549	lung
9	chr18:25783800-25785000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr18:25783800-25785000	Enhancers	HMEC	breast
11	chr18:25783800-25785000	Enhancers	HSMM	muscle
12	chr18:25783800-25785000	Enhancers	Osteobl	bone
13	chr18:25783800-25785200	Enhancers	NHEK	skin
14	chr18:25783800-25785400	Enhancers	Hela-S3	cervix
15	chr18:25783800-25785400	Enhancers	HUVEC	blood vessel
16	chr18:25784000-25784400	Enhancers	Adipose Nuclei	Adipose
17	chr18:25784000-25784600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr18:25784000-25784800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr18:25784000-25784800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr18:25784000-25784800	Enhancers	HSMMtube	muscle
21	chr18:25784000-25785000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr18:25784000-25785200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr18:25784000-25785200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr18:25784000-25785200	Enhancers	NHLF	lung

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