Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11083269	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs11659841	1.00[ASN][1000 genomes]
rs11662215	0.90[ASN][1000 genomes]
rs11665376	0.84[EUR][1000 genomes]
rs11877930	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs12457786	0.90[EUR][1000 genomes]
rs12966227	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1988880	0.81[ASN][1000 genomes]
rs1990414	1.00[ASN][1000 genomes]
rs2159641	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2191634	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2215502	0.84[ASN][1000 genomes]
rs4800297	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs713198	0.96[CEU][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.90[EUR][1000 genomes]
rs7236720	0.88[EUR][1000 genomes]
rs7242144	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs8085425	0.88[ASN][1000 genomes]
rs9304521	0.86[EUR][1000 genomes]
rs9797378	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs9945455	0.98[ASN][1000 genomes]
rs9948832	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs9949962	0.91[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv9622	chr18:25749905-26032816	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25784600-25788400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr18:25784800-25788200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr18:25785000-25788600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr18:25785000-25788600	Weak transcription	Osteobl	bone
5	chr18:25788000-25788400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr18:25788000-25788400	Flanking Active TSS	Dnd41	blood
7	chr18:25788000-25789000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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