Variant report

Variant	rs1988880
Chromosome Location	chr18:25789269-25789270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11659841	0.81[ASN][1000 genomes]
rs12051984	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12966227	0.82[ASN][1000 genomes]
rs1990414	0.81[ASN][1000 genomes]
rs2109627	0.81[ASN][1000 genomes]
rs2159641	0.86[ASN][1000 genomes]
rs2191634	0.86[ASN][1000 genomes]
rs2215502	0.90[ASN][1000 genomes]
rs8085425	0.93[ASN][1000 genomes]
rs9960600	0.86[EUR][1000 genomes]
rs9973095	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv9622	chr18:25749905-26032816	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25788200-25789400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr18:25788400-25789400	Enhancers	Primary hematopoietic stem cells	blood
3	chr18:25788600-25789800	Enhancers	Osteobl	bone
4	chr18:25789000-25790200	Enhancers	Dnd41	blood
5	chr18:25789200-25789600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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