Variant report
| Variant | rs2191634 |
|---|---|
| Chromosome Location | chr18:25789972-25789973 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11083269 | 0.85[EUR][1000 genomes] |
| rs11659841 | 0.94[ASN][1000 genomes] |
| rs11662215 | 0.85[ASN][1000 genomes] |
| rs11665376 | 0.85[EUR][1000 genomes] |
| rs11877930 | 0.90[EUR][1000 genomes] |
| rs12457786 | 0.83[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12966227 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1988880 | 0.86[ASN][1000 genomes] |
| rs1990414 | 0.94[ASN][1000 genomes] |
| rs2109627 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2159641 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4800297 | 0.90[EUR][1000 genomes] |
| rs713198 | 0.82[CHB][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7236720 | 0.89[EUR][1000 genomes] |
| rs7242144 | 0.91[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs8085425 | 0.83[ASN][1000 genomes] |
| rs9304521 | 0.87[EUR][1000 genomes] |
| rs9797378 | 0.84[EUR][1000 genomes] |
| rs9945455 | 0.93[ASN][1000 genomes] |
| rs9948832 | 0.84[CHB][hapmap];0.89[EUR][1000 genomes] |
| rs9949962 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761996 | chr18:24866083-25818618 | Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv9622 | chr18:25749905-26032816 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:25789000-25790200 | Enhancers | Dnd41 | blood |
