Variant report

Variant	rs11083269
Chromosome Location	chr18:25867046-25867047
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11665376	0.84[EUR][1000 genomes]
rs11877930	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs12457786	0.91[EUR][1000 genomes]
rs12966227	0.84[EUR][1000 genomes]
rs1476850	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2109627	0.84[EUR][1000 genomes]
rs2159641	0.84[EUR][1000 genomes]
rs2191634	0.85[EUR][1000 genomes]
rs4800297	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs713198	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs7236720	0.96[EUR][1000 genomes]
rs7242144	0.91[EUR][1000 genomes]
rs9304521	0.94[EUR][1000 genomes]
rs9797378	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs9948832	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9949962	0.96[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9622	chr18:25749905-26032816	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25862600-25867200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:25865200-25867200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr18:25866400-25867800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr18:25866600-25868200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr18:25866800-25867200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr18:25866800-25867200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
7	chr18:25866800-25867800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr18:25866800-25868000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr18:25866800-25868200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr18:25867000-25867200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
11	chr18:25867000-25867400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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