Variant report

Variant	rs7242144
Chromosome Location	chr18:25820316-25820317
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11083269	0.91[EUR][1000 genomes]
rs11665376	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11877930	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12457786	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12966227	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2109627	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2159641	0.91[EUR][1000 genomes]
rs2191634	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4800297	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs713198	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7236720	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9304521	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9797378	0.90[EUR][1000 genomes]
rs9948832	0.95[EUR][1000 genomes]
rs9949962	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9622	chr18:25749905-26032816	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25820000-25820800	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr18:25820000-25821000	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr18:25820200-25820400	Active TSS	H1 Cell Line	embryonic stem cell
4	chr18:25820200-25820800	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr18:25820200-25820800	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr18:25820200-25820800	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr18:25820200-25821000	Active TSS	H9 Cell Line	embryonic stem cell
8	chr18:25820200-25821000	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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