Variant report

No.	Distal block	Cell Line	Cell type
1	chr20:52824392..52826194-chr20:52913141..52916044,3	MCF-7	breast:
2	chr20:52915087..52916709-chr20:52940823..52942611,2	MCF-7	breast:
3	chr20:52911450..52915662-chr20:52921093..52925920,4	MCF-7	breast:
4	chr20:52887540..52889848-chr20:52915513..52918256,2	MCF-7	breast:
5	chr20:52901774..52903726-chr20:52915299..52918140,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101132	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1477739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16999399	1.00[EUR][1000 genomes]
rs2616329	1.00[EUR][1000 genomes]
rs2616331	1.00[EUR][1000 genomes]
rs2616334	1.00[EUR][1000 genomes]
rs2616337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2797969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55972874	1.00[EUR][1000 genomes]
rs57927391	1.00[EUR][1000 genomes]
rs6014025	1.00[EUR][1000 genomes]
rs60215168	1.00[EUR][1000 genomes]
rs6022993	1.00[EUR][1000 genomes]
rs6022994	1.00[EUR][1000 genomes]
rs6023260	1.00[EUR][1000 genomes]
rs6023271	1.00[EUR][1000 genomes]
rs6091884	1.00[EUR][1000 genomes]
rs6097991	1.00[EUR][1000 genomes]
rs6097995	1.00[EUR][1000 genomes]
rs61495423	1.00[EUR][1000 genomes]
rs793039	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv962638	chr20:52883415-52917517	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52915000-52916200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr20:52915200-52915600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:52915200-52915600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr20:52915200-52915600	Enhancers	Pancreas	Pancrea

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